Saturday, September 26, 2009

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

Summary: ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Availability and Implementation: This package is implemented in R and available at the Bioconductor web site; the package contains a ‘vignette’ outlining typical work flows.
(source URL, Via Bioinformatics - current issue.)