Saturday, January 16, 2010

BamView: Viewing mapped read alignment data in the context of the reference sequence.

Summary: BamView is an interactive Java application for visualising the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.
Availability: BamView and Artemis are freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at: http://bamview.sourceforge.net/
(this Post content was reproduced from: http://bioinformatics.oxfordjournals.org/cgi/content/short/btq010v1?rss=1, Via Bioinformatics - Advance Access.)