Saturday, July 3, 2010

cgatools 1.0.0 sourceforge page

#alttext#
The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities. A C++ API is available as well. For information on how to install cgatools, see the install guide. For a discussion of the motivation and design decisions for cgatools, see the methods document.

The general areas of functionality include:

Genome comparison
snpdiff
calldiff
Format conversion
map2sam
evidence2sam (beta)
Reference tools
fasta2crr
crr2fasta
listcrr
decodecrr

(this Post content was reproduced from: http://cgatools.sourceforge.net/docs/1.0.0/)