Wednesday, October 20, 2010

SmashCommunity: A metagenomic annotation and analysis tool

Summary: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.


Availability: SmashCommunity is freely available at http://www.bork.embl.de/software/smash


Contact: bork@embl.de


(this Post content was reproduced from: http://bioinformatics.oxfordjournals.org/cgi/content/short/btq536v1?rss=1, Via Bioinformatics - Advance Access.)