Friday, June 10, 2011

VcfCodingSnps (enhance your vcf files with functional annotations)

Great tool at U-Michigan (Abecassis lab)

VcfCodingSnps - Genome Analysis Wiki: vcfCodingSnps[1] is a SNP annotation tool that annotates coding variants in a VCF format input file. It takes a VCF as input and generates an annotated VCF file as output. The tool is currently under development by Yanming Li, a doctoral student at the University of Michigan Center for Statistical Genetics. For any issues with the program, please contact Yanming. A detailed tutorial (+Wiki) and download page can be found at http://genome.sph.umich.edu/wiki/VcfCodingSnps

(Via http://www.sph.umich.edu/csg/liyanmin/vcfCodingSnps/.)