Sunday, November 20, 2011

Fwd: TREAT: A Bioinformatics Tool for Variant Annotations and Visualizations in Targeted and Exome Sequencing Data

Fwd: please follow footer link
TREAT: A Bioinformatics Tool for Variant Annotations and Visualizations in Targeted and Exome Sequencing Data:

Summary: TREAT (Targeted RE-sequencing Annotation Tool) is a tool for facile navigation and mining of the variants from both targeted re-sequencing and whole exome sequencing. It provides a rich integration of publicly available as well as in-house developed annotations and visualizations for variants, variant-hosting genes, and host-gene pathways.

Implementation and Availability: TREAT is freely available to non-commercial users as either a stand-alone annotation and visualization tool, or as a comprehensive workflow integrating sequencing alignment and variant calling. The executables, instructions, and the Amazon Cloud Images of TREAT can be downloaded at the website: http://ndc.mayo.edu/mayo/research/biostat/stand-alone-packages.cfm

Contact: Hossain.Asif@mayo.edu

Supplementary information: Supplementary data are provided at Bioinformatics online


(Original Post: Bioinformatics - Advance Access.)