Thursday, November 10, 2011

Fwd:snpEff: SNP effect predictor

Fwd: please follow footer link

snpEff: SNP effect predictor:  Features: Fast: Makes over a millon preditions per minute.
Flexible: You can add custom genomes and annotations
Galaxy: Integrated with Galaxy
GATK: Integrated with GATK
Multiple species: Supports multiple codon table (e.g. mithoncondrial DNA)
What is snpEff? It's a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs).

(Original Post: http://snpeff.sourceforge.net/.)