Sunday, December 4, 2011

Fwd: UPDATE: Public Genomes Summary Analysis Files

Fwd: please follow footer link
UPDATE: Public Genomes Summary Analysis Files:

Hi

Files containing summary information about the Complete Genomics Public Genomes assembled with Complete Genomics Analysis Pipeline 2.0 are now available.  

 These files provide aggregated information for the small variants identified across the 69 genomes as well as a 54 genome subset that excludes any closely-related individuals. These files include:

  • A list of all of the variants in the set of genomes, generated using the CGATM Tools (v1.5) listvariants command.
  • A table indicating which variants are present in which genomes, generated using the CGA Tools (v1.5) testvariants command.
  • A table indicating which variants are present in which genomes including variant frequency, in VCF format.

These files have multiple applications, including enabling customers to filter away common variants identified across the public genomes.  

More information about these files can be found here:

ftp://ftp2.completegenomics.com/Public_Genome_Summary_Analysis/Complete_Genomics_Public_Genome_Summary_Analysis_README.pdf

The files can be downloaded here:  ftp://ftp2.completegenomics.com/Public_Genome_Summary_Analysis/.

Cheers

Shaun



(Original Post: CGI user forum.)