Friday, February 3, 2012

Fwd: picard - Browse /picard-tools/1.61 at SourceForge.net

Fwd: please follow footer link
picard - Browse /picard-tools/1.61 at SourceForge.net: Picard release 1.61
30 January 2012

- PicardException used to extend SAMException, which extended RuntimeException. Now PicardException extends RuntimeException directly. If you have code that catches SAMException, you may want to add a catch clause for PicardException if you use the net.sf.picard classes. If you only use classes in net.sf.samtools, you should never see PicardException thrown.

- IlluminaDataProviderFactory.java: Ensure position data type is in set of data types in ctors rather than in makeDataProvider(), in order to avoid ConcurrentModificationException.

(Original Post: http://sourceforge.net/projects/picard/files/.)