Monday, May 7, 2012

Fwd: Bowtie: An ultrafast, memory-efficient short read aligner (0.12.8 release - 5/6/12)

Fwd: please follow footer link

* Fixed a bug that would sometimes cause an immediate segmentation fault in --sam mode.

* Fixed script to not omit chromosome 25.

* Removed -B option from usage message for bowtie-build; that option is not implemented.

* Fixed issue that could cause Bowtie not to compile when BOWTIE_PTHREADS is left undefined and pthreads.h is not present.

* Elaborated documentation for -B/--offbase option to indicate that it only affects offsets in the default output mode, not in SAM mode.

(Original Post: Bowtie web-site.)