Friday, October 12, 2012

Fwd: Re: [genome] Mouse clustered TFBS track

Fwd: please follow footer link
Re: [genome] Mouse clustered TFBS track: Hello Chih,

There will be a TFBS track for mouse.
The clustering methods for the existing track are not published, but the clustering tool is available in our source tree here:
kent/src/hg/regulate/regCluster, and algorithm is in library file
src/lib/peakCluster.c.
You can read more about downloading the kent source tree here:
http://hgdownload.cse.ucsc.edu/downloads.html#source_downloa ds
Note that it may be tricky to get these tools working outside our local environment.
Best regards,
Pauline Fujita (UCSC Genome Bioinformatics Group)
http://genome.ucsc.edu

(Original Post: UCSC-mailing.)