Sunday, October 14, 2012

Fwd: Galaxy Unix-Tools - from Greg Hannon's lab

Fwd: please follow footer link

Introduction
Using this package, you can run common unix command line tools from within a Galaxy server.
Available Tools
Simple Text Processing (complementing Galaxy's text manipulation tools):
Remove Ending (of a file)
Find & Replace text in line/column
Select lines (from a file) by matching word list

Advance Text Processing Tools:
*awk
*sed
*sort
*grep
*join
*uniq
*cut

note: Galaxy already have some tools that perform similar operations (especially grep,cut,join, and uniq). The tools in this package provide extended options, and resemble more closely to the unix command line versions.


(Original Post: Galaxy Unix-Tools - Contact.)