Saturday, March 16, 2013

Fwd: /samtools/0.1.19 is OUT!

Fwd: please follow footer link

/samtools/0.1.19: "/samtools/0.1.19"

new commands (vs .18):

* bedcov : read depth per BED region
Usage: samtools bedcov [...]

* bamshuf : shuffle and group alignments by name
Usage: bamshuf [-Ou] [-n nFiles] [-c cLevel]
Options: -O output to stdout
-u uncompressed BAM output
-l INT compression level [1]
-n INT number of temporary files [64]

removed cmd:

* pad2unpad convert padded BAM to unpadded BAM

(Via SAMTools.)