Saturday, March 16, 2013

Fwd: ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems

Fwd: please follow footer link

ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems: "

Motivation: BLAST remains one of the most widely used tools in computational biology. The rate at which new sequence data is available continues to grow exponentially, driving the emergence of new fields of biological research. At the same time, multicore systems and conventional clusters are more accessible. ScalaBLAST has been designed to run on conventional multiprocessor systems with an eye to extreme parallelism, enabling parallel BLAST calculations using >16 000 processing cores with a portable, robust, fault-resilient design that introduces little to no overhead with respect to serial BLAST.

Availability: ScalaBLAST 2.0 source code can be freely downloaded from http://omics.pnl.gov/software/ScalaBLAST.php.

Contact:christopher.oehmen@pnl.gov

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(Via Bioinformatics - current issue.)