Saturday, June 8, 2013

Fwd: Pathview: an R/Bioconductor package for pathway based data integration and visualization

Fwd: please follow footer link

Pathview: an R/Bioconductor package for pathway based data integration and visualization: "

Summary: Pathview is a novel tool set for pathway based data integration and visualization. It maps and renders user data on relevant pathway graphs. Users only need to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway, and renders pathway graphs with the mapped data. Although built as a stand-alone program, Pathview may seamlessly integrate with pathway and functional analysis tools for large-scale and fully automated analysis pipelines.

Availability: The package is freely available under the GPLv3 licence through Bioconductor and R-Forge. It is available at http://bioconductor.org/packages/release/bioc/html/pathview.html and at http://Pathview.r-forge.r-project.org/.

Contact:luo_weijun@yahoo.com

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(Via Bioinformatics - Advance Access.)