Wednesday, July 17, 2013

Fwd: Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes

Fwd: please follow footer link

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes: "

Summary: We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application.

Availabilty: Cake is open-source and is available from http://cakesomatic.sourceforge.net/

Contact:da1@sanger.ac.uk

Supplementary Information:Supplementary data are available at Bioinformatics online.

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(Via Bioinformatics - Advance Access.)